uniprot.pl -- uniprot: A complete example for proSQLite.

Look at the sources for the difference predicate calls.

The output should look like:

άμπελος;lib/db% swipl -f none

?- uniprot.
Running on :date(2012,10,17)
Using database at: uniprot.sqlite

table:secondary_accessions
table:identifier_mapping

secondary_accessions/secondary_accession
secondary_accessions/primary_accession
identifier_mapping/uniprot_accession
identifier_mapping/identifier_type
identifier_mapping/target_identifier

secondary_accessions:286525
identifier_mapping:3044651

secondary_accessions+286525
identifier_mapping+3044651

[A0A111,Q10706]-_G309
rows_for(_G309):[row(A0A111),row(Q10706)]

by_findall(P64943,[A0A111,Q10706])
Caution! Deleting db entries for-P64943
Affected rows:row(2)
now(P64943,[])

Not to worry! Adding back the db entries for-P64943
affected_two(row(1),row(1))
finally(P64943,[A0A111,Q10706])

v:0:1:0
vd:date(2012,10,17)

citation
Exploring file based databases via an Sqlite interface.
 Canisius Sander, Nicos Angelopoulos and Lodewyk Wessels
 In the ICLP Workshop on Logic-based methods in Programming Environments (WLPE'12),
 p.2-9, 2012. Budapest, Hungary.
true.

?-

version

- 0.1.0, 2012/10/17

See also

- latest version at http://bioinformatics.nki.nl/~nicos/sware/prosqlite/uniprot.pl

- also http://bioinformatics.nki.nl/~nicos/sware/sqlite/uniprot.sqlite (184Mb)

uniprot

Test predicate for prosqlite. Tests all components. You need the test database from http://bioinformatics.nki.nl/~nicos/sware/sqlite/uniprot.sqlite